Just found this post which deals with the exact same problem that I have been fighting with…
After upgrading to Ubuntu 9.10 (Karmic Koala) some buttons no longer work in Eclipse 3.5. Clicking has no effect but keyboard shortcuts still work.
Create a script to start eclipse with the following export…
#!/bin/sh
export GDK_NATIVE_WINDOWS=1
/opt/eclipse-3.5/eclipse
… and remember to change the . . . → Read More: Problems with Eclipse buttons in Ubuntu 9.10
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